The method for cooling a hot-rolled steel sheet of the invention includes a target ratio-setting process in which a top and bottom heat transfer coefficient ratio X1, at which a temperature standard deviation Y becomes a minimum value Ymin, is set as a target ratio Xt based on correlation data between a top and bottom heat transfer coefficient ratio X of the hot-rolled steel sheet and the temperature standard deviation Y of the hot-rolled steel sheet; and a cooling control process in which at least one of an amount of heat dissipated from a top surface by cooling and an amount of heat dissipated from a bottom surface by cooling of the hot-rolled steel sheet in the cooling section is controlled so that the top and bottom heat transfer coefficient ratio X of the hot-rolled steel sheet in the cooling section matches the target ratio Xt.