发明名称 Biopolymer Sequencing By Hybridization of probes to form ternary complexes and variable range alignment
摘要 Methods for sequencing a biopolymer by forming local ternary complexes along the length of the double-stranded biopolymer target molecule using one or more probes and obtaining information about the location of the probe(s) using a detector. These methods offer particular advantage when implemented with nanopore (including micropore) detection systems.
申请公布号 US9051609(B2) 申请公布日期 2015.06.09
申请号 US201213589608 申请日期 2012.08.20
申请人 NABsys, Inc. 发明人 Oliver John;Bready Barrett;Goldstein Peter;Preparata Franco
分类号 C12Q1/68;C07H21/00 主分类号 C12Q1/68
代理机构 Goodwin Procter LLP 代理人 Goodwin Procter LLP
主权项 1. A method for determining a whole or partial sequence of a target biopolymer, the method comprising the steps of: providing a double-stranded biopolymer target molecule; contacting said target molecule or fragment thereof with a first probe having specificity for one or more first recognition sites of said target molecule, thereby forming one or more first local ternary complexes along said double-stranded biopolymer target molecule or fragment thereof, said one or more first recognition sites each having a first known sequence, wherein the first probe is a member selected from the group consisting of an oligonucleotide, a peptide, and a polyamide; contacting said target molecule or fragment thereof with a second probe having specificity for one or more second recognition sites of said target molecule, thereby forming one or more second local ternary complexes along said double-stranded biopolymer target molecule or fragment thereof, said one or more second recognition sites each having a second known sequence; passing said double-stranded biopolymer target molecule or fragment thereof through a detector configured to detect a ternary complex through an increase or decrease of signal; detecting an electrical signal indicative of one or more locations of at least a subset of said one or more first local ternary complexes along said double-stranded biopolymer target molecule or fragment thereof to determine a first probe map; detecting an electrical signal indicative of one or more locations of at least a subset of said one or more second local ternary complexes along said double-stranded biopolymer target molecule or fragment thereof to determine a second probe map; and determining said whole or partial sequence of said target biopolymer using at least said first probe map and said second probe map.
地址 Providence RI US