发明名称 |
GENOME READ ALIGNMENT OF HIGH EFFICIENCY IN IN-MEMORY DATABASE |
摘要 |
<p>The present application refers to high performance, low-cost, gapped read alignment that produces high quality alignments of a complete human genome in a few minutes. Additionally the algorithm is more than an order of magnitude faster than previous approaches using a low-cost workstation. The result is obtained via careful algorithm engineering of the seeding based approach. The use of non-hashed seeds and combine them using techniques from search engine ranking to achieve fast cache-efficient processing. The algorithm can also be well parallelized. Integration into an in-memory database infrastructure (IMDB) leads to low overhead for data management and further analysis.</p> |
申请公布号 |
JP2014146319(A) |
申请公布日期 |
2014.08.14 |
申请号 |
JP20140008649 |
申请日期 |
2014.01.21 |
申请人 |
HASSO PLATTNER INSTITUTE FUR SOFTWARESYSTEMTECHNIK GMBH |
发明人 |
HASSO PLATTNER ; MATTHIEU-PATRICK SCHAPRANOW ; EMANUEL ZIEGLER |
分类号 |
G06F17/30;G06F12/00 |
主分类号 |
G06F17/30 |
代理机构 |
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代理人 |
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主权项 |
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地址 |
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