发明名称 Method for analyzing DNA methylation based on MspJI cleavage
摘要 Provided is a method for detecting DNA methylation based on MspJI cleavage and performing bioinformatics analysis of genomic methylation.
申请公布号 US2014364321(A1) 申请公布日期 2014.12.11
申请号 US201114369447 申请日期 2011.12.31
申请人 BGI TECH SOLUTIONS CO., LTD. 发明人 Lu Hanlin;Wang Jun;Wang Jian;Yang Huanming
分类号 C12Q1/68;G06F19/18;G06F19/22 主分类号 C12Q1/68
代理机构 代理人
主权项 1. A method of detecting a genome DNA methylation, comprising following steps: 1) digesting a genome DNA sample with MspJI, to obtain fragments, 2) sequencing the fragments, to obtain reads; 3) aligning the reads to a reference sequence, to select a uniquely aligned read; and 4) determining a site in the reference sequence being methylated in the uniquely aligned read; wherein the site in the reference sequence corresponds to a C site in at least one of YNCGNR, YCNGR, CNNG, GNNC, CYNRG, CNYRNG, YNNGCNNR, YNNGNCNNR, CNNR, YNNG and a complementary strand thereof, wherein Y is C or T, R is A or G, N is A, C, T or G, and H is C, A or T.
地址 Shenzhen, Guangdong CN