Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.
申请公布号
WO2012025837(A3)
申请公布日期
2012.11.29
申请号
WO2011IB03020
申请日期
2011.07.20
申请人
KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY;ZIDAN, MOHAMMED, AFFAN;BONNY, TALAL;SALAMA, KHALED, NABIL