A PROTOCOL FOR GENOME SEQUENCE ALIGNMENT ON GRID ENVIRONMENT

摘要

A method for aligning a genome sequence in a grid computing environment and a program storing medium are provided to efficiently apply present sequence alignment programs difficult to compare a large quality of genome sequences owing to restriction of computing resources under the grid computing environment. The first and second genome sequences are cut by specific overlapped section based on calculating algorithm which aligns the size of the first and second sequences and the sequences, and repeated sequences in cut fragments are indicated(S100). The first and second genome sequence fragments are distributed to each computer of the grid computing environment, and are aligned by using the sequence alignment program(S200). Generated alignment results are added up and only the statistically meaning sequence information are extracted(S300).